As an atheist, I'm really not into the position to judge whether something is good theology or not. I can point out implications, inconsistencies, and absurdities, but I don't have any basis for what makes something good theology. As such, if someone makes an argument on the basis of their interpretation of scripture, can I really say that they're interpretation is correct?
Ken Miller, for example, argues that ID proponents are wrong on theological grounds. I've heard some people argue that there is hell and some argue that there isn't. I've heard some theologians cite the first two books of Genesis to show that it's not meant to be taken literally, while others say that it should. And to me, that's just fighting over how many angels are dancing on the head of a pin.